DeepDNA

Tools

Token cost is the o200k count of the tools list JSON, including schemas, before any tool is called.

• list_genes

  List the genes in the DeepDNA knowledge base, with a one-line summary and category for each.

• lookup_gene

  Everything curated about one gene: function, key variants with rsIDs, metabolizer or function phenotypes, drug interactions, what a consumer genotyping array can and cannot tell you, and sources.

• lookup_variant

  One variant by dbSNP rsID: gene, star-allele or common name, alleles, functional effect, population frequency and sources. Optionally pass the genotype read at that position (e.g. from a raw DNA file)

• lookup_drug_gene

  Pharmacogenomic guidance for a gene, optionally for one drug: guideline (CPIC or DPWG, "drug label", or null when the record rests on the primary literature), summary of the recommendation, phenotypes

• check_medications

  Given a list of generic drug names, say which ones have a curated drug–gene record, with which genes and what each record rests on (a CPIC or DPWG guideline, a drug label, or the primary literature),

• request_beta_access

  Register the user's interest in DeepDNA's private beta (DNA file parsing, annotation, bloodwork; not deployed yet). Only call this after the user has explicitly agreed to share their email with DeepDN